Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PhnH | Psyr_0692 | Psyr_2252 | Psyr_0692 | Phosphonate metabolism. | Binding-protein-dependent transport systems inner membrane component. | 0.413 |
PhnH | Psyr_0693 | Psyr_2252 | Psyr_0693 | Phosphonate metabolism. | Binding-protein-dependent transport systems inner membrane component. | 0.469 |
PhnH | Psyr_0695 | Psyr_2252 | Psyr_0695 | Phosphonate metabolism. | Extracellular solute-binding protein, family 3. | 0.492 |
PhnH | Psyr_2248 | Psyr_2252 | Psyr_2248 | Phosphonate metabolism. | Phosphonate-binding periplasmic protein. | 0.960 |
PhnH | Psyr_2249 | Psyr_2252 | Psyr_2249 | Phosphonate metabolism. | Binding-protein-dependent transport systems inner membrane component. | 0.893 |
PhnH | Psyr_2250 | Psyr_2252 | Psyr_2250 | Phosphonate metabolism. | Transcriptional regulator, GntR family. | 0.961 |
PhnH | Psyr_2251 | Psyr_2252 | Psyr_2251 | Phosphonate metabolism. | Phosphonate metabolism PhnG. | 0.999 |
PhnH | Psyr_2253 | Psyr_2252 | Psyr_2253 | Phosphonate metabolism. | Phosphonate metabolism. | 0.999 |
PhnH | Psyr_2254 | Psyr_2252 | Psyr_2254 | Phosphonate metabolism. | Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. | 0.997 |
PhnH | phnC2 | Psyr_2252 | Psyr_2247 | Phosphonate metabolism. | ABC transporter; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.952 |
Psyr_0692 | PhnH | Psyr_0692 | Psyr_2252 | Binding-protein-dependent transport systems inner membrane component. | Phosphonate metabolism. | 0.413 |
Psyr_0692 | Psyr_0693 | Psyr_0692 | Psyr_0693 | Binding-protein-dependent transport systems inner membrane component. | Binding-protein-dependent transport systems inner membrane component. | 0.982 |
Psyr_0692 | Psyr_0695 | Psyr_0692 | Psyr_0695 | Binding-protein-dependent transport systems inner membrane component. | Extracellular solute-binding protein, family 3. | 0.990 |
Psyr_0692 | Psyr_2248 | Psyr_0692 | Psyr_2248 | Binding-protein-dependent transport systems inner membrane component. | Phosphonate-binding periplasmic protein. | 0.967 |
Psyr_0692 | Psyr_2249 | Psyr_0692 | Psyr_2249 | Binding-protein-dependent transport systems inner membrane component. | Binding-protein-dependent transport systems inner membrane component. | 0.923 |
Psyr_0692 | Psyr_2253 | Psyr_0692 | Psyr_2253 | Binding-protein-dependent transport systems inner membrane component. | Phosphonate metabolism. | 0.486 |
Psyr_0692 | Psyr_2254 | Psyr_0692 | Psyr_2254 | Binding-protein-dependent transport systems inner membrane component. | Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. | 0.419 |
Psyr_0692 | phnC2 | Psyr_0692 | Psyr_2247 | Binding-protein-dependent transport systems inner membrane component. | ABC transporter; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.958 |
Psyr_0693 | PhnH | Psyr_0693 | Psyr_2252 | Binding-protein-dependent transport systems inner membrane component. | Phosphonate metabolism. | 0.469 |
Psyr_0693 | Psyr_0692 | Psyr_0693 | Psyr_0692 | Binding-protein-dependent transport systems inner membrane component. | Binding-protein-dependent transport systems inner membrane component. | 0.982 |
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