STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_3862Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
Psyr_3863
SEC-C motif protein; Belongs to the UPF0225 family.
  
    0.803
Psyr_1060
Sel1-like repeat protein.
  
     0.762
Psyr_1057
Alginate biosynthesis protein AlgX.
  
     0.761
Psyr_3551
Arc-like DNA binding protein.
  
     0.755
Psyr_1058
Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis.
  
     0.752
Psyr_3286
Conserved hypothetical protein.
  
     0.715
algL
Poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
     0.709
Psyr_4068
Conserved hypothetical protein.
  
     0.707
Psyr_2426
Conserved domain protein.
  
     0.705
Psyr_3688
Conserved hypothetical protein.
  
     0.692
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.