Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KatE | Psyr_1794 | Psyr_0280 | Psyr_1794 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | Amino acid adenylation. | 0.522 |
KatE | Psyr_4152 | Psyr_0280 | Psyr_4152 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.722 |
Psyr_1794 | KatE | Psyr_1794 | Psyr_0280 | Amino acid adenylation. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.522 |
Psyr_1794 | Psyr_4152 | Psyr_1794 | Psyr_4152 | Amino acid adenylation. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.746 |
Psyr_1794 | rplC | Psyr_1794 | Psyr_4548 | Amino acid adenylation. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.933 |
Psyr_1794 | rplM | Psyr_1794 | Psyr_4120 | Amino acid adenylation. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.933 |
Psyr_1794 | rplN | Psyr_1794 | Psyr_4538 | Amino acid adenylation. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.908 |
Psyr_1794 | rplO | Psyr_1794 | Psyr_4529 | Amino acid adenylation. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.915 |
Psyr_1794 | rplQ | Psyr_1794 | Psyr_4523 | Amino acid adenylation. | LSU ribosomal protein L17P. | 0.914 |
Psyr_1794 | rpsQ | Psyr_1794 | Psyr_4539 | Amino acid adenylation. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.852 |
Psyr_1794 | ybeY | Psyr_1794 | Psyr_4347 | Amino acid adenylation. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.812 |
Psyr_4152 | KatE | Psyr_4152 | Psyr_0280 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.722 |
Psyr_4152 | Psyr_1794 | Psyr_4152 | Psyr_1794 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Amino acid adenylation. | 0.746 |
Psyr_4152 | Psyr_4153 | Psyr_4152 | Psyr_4153 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Conserved hypothetical protein. | 0.945 |
Psyr_4152 | rplC | Psyr_4152 | Psyr_4548 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.738 |
Psyr_4152 | rplM | Psyr_4152 | Psyr_4120 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.752 |
Psyr_4152 | rplN | Psyr_4152 | Psyr_4538 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.702 |
Psyr_4152 | rplO | Psyr_4152 | Psyr_4529 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.745 |
Psyr_4152 | rplQ | Psyr_4152 | Psyr_4523 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | LSU ribosomal protein L17P. | 0.756 |
Psyr_4152 | rpsQ | Psyr_4152 | Psyr_4539 | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.732 |
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