STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_4227Dihydrodipicolinate synthetase; Belongs to the DapA family. (303 aa)    
Predicted Functional Partners:
Psyr_4225
Galactarate dehydratase.
 
  
 0.974
Psyr_3120
D-glucarate dehydratase.
 
  
 0.971
Psyr_2716
Mandelate racemase/muconate lactonizing enzyme:Mandelate racemase/muconate lactonizing enzyme.
 
  
 0.966
Psyr_3157
Aldehyde dehydrogenase.
 
 
 0.944
Psyr_4228
Transcriptional regulator, GntR family.
 
   
 0.698
Psyr_0902
Conserved hypothetical protein.
 
   
 0.679
Psyr_4226
D-galactonate transporter.
 
  
 0.642
Psyr_3645
Prephenate dehydratase.
  
  
 0.619
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.605
Psyr_2235
Gluconolactonase.
 
     0.593
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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