Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AroE | Psyr_3644 | Psyr_2418 | Psyr_3644 | Shikimate dehydrogenase. | Prephenate dehydrogenase. | 0.719 |
AroE | Psyr_3645 | Psyr_2418 | Psyr_3645 | Shikimate dehydrogenase. | Prephenate dehydratase. | 0.620 |
AroE | aroB | Psyr_2418 | Psyr_0409 | Shikimate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.460 |
AroE | aroE | Psyr_2418 | Psyr_0025 | Shikimate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.937 |
AroE | aroE-2 | Psyr_2418 | Psyr_2132 | Shikimate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.925 |
AroE | aroK | Psyr_2418 | Psyr_0408 | Shikimate dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.958 |
AroE | aroQ | Psyr_2418 | Psyr_4399 | Shikimate dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.918 |
Psyr_3644 | AroE | Psyr_3644 | Psyr_2418 | Prephenate dehydrogenase. | Shikimate dehydrogenase. | 0.719 |
Psyr_3644 | Psyr_3645 | Psyr_3644 | Psyr_3645 | Prephenate dehydrogenase. | Prephenate dehydratase. | 0.999 |
Psyr_3644 | aroB | Psyr_3644 | Psyr_0409 | Prephenate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.974 |
Psyr_3644 | aroE | Psyr_3644 | Psyr_0025 | Prephenate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.765 |
Psyr_3644 | aroE-2 | Psyr_3644 | Psyr_2132 | Prephenate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.756 |
Psyr_3644 | aroK | Psyr_3644 | Psyr_0408 | Prephenate dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.992 |
Psyr_3644 | aroQ | Psyr_3644 | Psyr_4399 | Prephenate dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.580 |
Psyr_3645 | AroE | Psyr_3645 | Psyr_2418 | Prephenate dehydratase. | Shikimate dehydrogenase. | 0.620 |
Psyr_3645 | Psyr_3644 | Psyr_3645 | Psyr_3644 | Prephenate dehydratase. | Prephenate dehydrogenase. | 0.999 |
Psyr_3645 | Psyr_4401 | Psyr_3645 | Psyr_4401 | Prephenate dehydratase. | acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.400 |
Psyr_3645 | aroB | Psyr_3645 | Psyr_0409 | Prephenate dehydratase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.729 |
Psyr_3645 | aroE | Psyr_3645 | Psyr_0025 | Prephenate dehydratase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.760 |
Psyr_3645 | aroE-2 | Psyr_3645 | Psyr_2132 | Prephenate dehydratase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.685 |
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