node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ECH_0402 | rplC | ECH_0402 | ECH_0409 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.997 |
ECH_0402 | rplD | ECH_0402 | ECH_0410 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.999 |
ECH_0402 | rplI | ECH_0402 | ECH_0310 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.978 |
ECH_0402 | rplS | ECH_0402 | ECH_0004 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.982 |
ECH_0402 | rplT | ECH_0402 | ECH_0197 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.951 |
ECH_0402 | rpmI | ECH_0402 | ECH_0198 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. | 0.895 |
ECH_0402 | rpsF | ECH_0402 | ECH_0308 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.922 |
ECH_0402 | rpsJ | ECH_0402 | ECH_0408 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.992 |
ECH_0402 | rpsP | ECH_0402 | ECH_0192 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Ribosomal protein S16; Identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.985 |
ECH_0402 | rpsR | ECH_0402 | ECH_0309 | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | Putative ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.962 |
rplC | ECH_0402 | ECH_0409 | ECH_0402 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Putative ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | 0.997 |
rplC | rplD | ECH_0409 | ECH_0410 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.999 |
rplC | rplI | ECH_0409 | ECH_0310 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
rplC | rplS | ECH_0409 | ECH_0004 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
rplC | rplT | ECH_0409 | ECH_0197 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rplC | rpmI | ECH_0409 | ECH_0198 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
rplC | rpsF | ECH_0409 | ECH_0308 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplC | rpsJ | ECH_0409 | ECH_0408 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplC | rpsP | ECH_0409 | ECH_0192 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S16; Identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rplC | rpsR | ECH_0409 | ECH_0309 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Putative ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |