STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknBPknB; COG family: serine/threonine protein kinases; PFAM_ID: pkinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (690 aa)    
Predicted Functional Partners:
BL0583
COG family: FHA-domain-containing proteins; PFAM_ID: FHA.
 
 
 
 0.999
BL0584
COG family: FHA-domain-containing proteins; PFAM_ID: FHA.
 
 
 
 0.999
garA
Possible signal transduction protein; GarA; COG family: FHA-domain-containing proteins; PFAM_ID: FHA.
 
 
 
 0.999
BL1551
Hypothetical protein.
   
 
 0.999
BL0585
Possible phosphoprotein phosphatase; COG family: protein serine/threonine phosphatases.
 
 
 0.993
ppp
Probable phosphoprotein phosphatase; Ppp; COG family: protein serine/threonine phosphatases; PFAM_ID: PP2C.
 
 
 0.964
pknA
PknA; COG family: serine/threonine protein kinases; PFAM_ID: pkinase.
 
 
0.937
rodA
Protein involved in cell wall formation and stabilization of the FtsZ ring during cell division; RodA or FtsW; COG family: bacterial cell division membrane protein; PFAM_ID: FTSW_RODA_SPOVE; Belongs to the SEDS family.
 
 
 0.932
pbpA
PbpA; COG family: cell division protein FtsI/penicillin-binding protein 2; PFAM_ID: Transpeptidase.
  
  
 0.897
BL1229
Possible Etk-like tyrosine kinase involved in Eps biosynthesis; COG family: ATPases involved in chromosome partitioning.
   
 
 0.681
Your Current Organism:
Bifidobacterium longum
NCBI taxonomy Id: 206672
Other names: B. longum NCC2705, Bifidobacterium longum NCC2705, Bifidobacterium longum str. NCC2705
Server load: low (26%) [HD]