STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argE_1Acetylornithine deacetylase. (392 aa)    
Predicted Functional Partners:
dapE_1
Putative succinyl-diaminopimelate desuccinylase.
  
  
 
0.925
dapE_2
Succinyl-diaminopimelate desuccinylase.
  
  
 
0.923
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
 
 0.923
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.913
dapC
Putative N-succinyldiaminopimelate aminotransferase DapC.
    
 0.908
OSY43213.1
Carbohydrate diacid transcriptional activator CdaR.
 
   
 0.907
catD_1
3-oxoadipate enol-lactonase 2.
 
 
 0.857
OSY43217.1
Hypothetical protein.
 
     0.838
OSY43220.1
Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase.
 
     0.831
OSY43214.1
Hypothetical protein.
 
   
 0.818
Your Current Organism:
Pseudonocardia autotrophica
NCBI taxonomy Id: 2074
Other names: ATCC 19727, Amycolata autotrophica, CIP 107114, DSM 535, IFO 12743, IMSNU 20050, JCM 4348, NBRC 12743, NRRL B-11275, Nocardia autotrophica, P. autotrophica, Streptomyces autotrophicus, VKM Ac-941
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