STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0086KEGG: vpa:VPA1591 dihydropteridine reductase; PFAM: Nitroreductase-like. (218 aa)    
Predicted Functional Partners:
Dde_2524
PFAM: Nitroreductase-like; KEGG: dat:HRM2_10320 NfnB1.
  
     0.729
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.600
Dde_1618
NAD(P)H dehydrogenase (quinone); PFAM: Flavodoxin-like fold; KEGG: dvu:DVU3135 flavodoxin-like fold domain-containing protein.
 
  
 0.561
Dde_0698
PFAM: ABC-2 type transporter; KEGG: das:Daes_1391 ABC-2 type transporter.
  
  
 0.555
Dde_2348
KEGG: dvm:DvMF_0004 protein of unknown function DUF181; TIGRFAM: YcaO-like; PFAM: YcaO-like; Tetratricopeptide TPR-1.
  
  
 0.543
Dde_2408
YcaO-domain protein; PFAM: YcaO-like; KEGG: dvm:DvMF_3119 protein of unknown function DUF181.
  
  
 0.511
Dde_0304
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dvm:DvMF_1805 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.507
Dde_0085
Hypothetical protein; KEGG: bfr:BF2780 O-actetyl transferase related protein.
       0.476
Dde_0557
Long-chain-fatty-acid--CoA ligase; KEGG: dvl:Dvul_0312 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.474
Dde_1725
KEGG: dvm:DvMF_0256 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.474
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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