STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0430PFAM: Glycosyl transferase, family 2; KEGG: drm:Dred_1399 cell wall biogenesis glycosyltransferase-like protein. (642 aa)    
Predicted Functional Partners:
Dde_0426
PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_1842 glycosyl transferase family 2.
  
 0.831
Dde_0429
PFAM: Methyltransferase type 11; KEGG: drm:Dred_1396 ubiquinone/menaquinone biosynthesis methylase-like protein.
       0.785
Dde_0431
PFAM: CDP-glycerol glycerophosphotransferase; Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: dvu:DVU2993 glycosyl transferase group 1/2 family protein.
 
  
0.785
Dde_2534
PFAM: Glycosyl transferase, family 2; KEGG: ret:RHE_CH01521 putative glucosyltransferase protein.
 
  
 0.753
Dde_1941
KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
  
  
 0.707
Dde_2336
KEGG: psl:Psta_3109 hypothetical protein.
  
 
 0.671
Dde_0427
UDP-glucose 4-epimerase; KEGG: dvu:DVU2996 NAD-dependent epimerase/dehydratase family protein; PFAM: NAD-dependent epimerase/dehydratase.
 
  
 0.667
Dde_0428
PFAM: Glycosyl transferase, group 1; KEGG: dvu:DVU2995 glycosyl transferase group 1 family protein.
     
 0.659
Dde_1658
PFAM: Polysaccharide deacetylase; KEGG: dvm:DvMF_0570 polysaccharide deacetylase.
  
  
 0.578
Dde_3250
PFAM: Polysaccharide deacetylase; KEGG: dvm:DvMF_1847 polysaccharide deacetylase.
  
  
 0.578
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.