STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_0844PFAM: Glycosyl transferase, family 2; KEGG: pab:PAB0772 glycosyl transferase. (312 aa)    
Predicted Functional Partners:
Dde_0846
PFAM: Glycosyl transferase, group 1; KEGG: maq:Maqu_1638 glycosyl transferase, group 1.
 
  
 0.846
Dde_0845
PFAM: O-antigen ligase-related; KEGG: gsu:GSU1954 hypothetical protein.
 
  
 0.843
Dde_0847
Eight transmembrane protein EpsH; KEGG: dvu:DVUA0055 hypothetical protein; TIGRFAM: Exosortase, EpsH; PFAM: Exosortase EpsH-related.
 
   
 0.793
Dde_0848
EpsI family protein; TIGRFAM: Methanolan biosynthesis EpsI; KEGG: gem:GM21_2446 EpsI family protein.
     
 0.738
Dde_0849
TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, putative; PFAM: ATP-binding region, ATPase-like; KEGG: dvl:Dvul_3043 integral membrane sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF.
 
   
 0.713
Dde_0843
PFAM: Glycosyl transferase, family 2; KEGG: rmr:Rmar_0575 glycosyl transferase family 2.
 
    
0.619
Dde_0842
PFAM: Asparagine synthase; KEGG: eba:ebA4312 hypothetical protein.
 
    0.605
Dde_0841
PFAM: ABC-2 type transporter; KEGG: hau:Haur_1034 ABC-2 type transporter.
 
  
 0.597
Dde_0851
Teichoic-acid-transporting ATPase; PFAM: ABC transporter-like; KEGG: ttr:Tter_2802 ABC transporter related protein; SMART: ATPase, AAA+ type, core.
 
  
 0.567
Dde_0838
PFAM: Glycosyl transferase, group 1; KEGG: tgr:Tgr7_2364 glycosyltransferase-like protein.
 
  
 0.562
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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