STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1207KEGG: dsa:Desal_0602 heterodisulfide reductase, C subunit. (204 aa)    
Predicted Functional Partners:
Dde_1208
KEGG: dba:Dbac_0849 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG.
 0.997
Dde_1210
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: dba:Dbac_0851 methyl-viologen-reducing hydrogenase delta subunit.
 
 0.997
Dde_1209
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: drt:Dret_0196 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
 0.996
Dde_1211
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; KEGG: drt:Dret_2313 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  0.994
Dde_3527
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: dma:DMR_01930 methyl-viologen-reducing hydrogenase delta subunit family protein.
 
 0.991
Dde_3525
KEGG: dsa:Desal_0601 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG.
 0.987
Dde_3526
PFAM: FAD dependent oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_0828 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
 0.987
Dde_3528
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_2313 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  0.979
Dde_1112
Quinone-interacting membrane-bound oxidoreductase; PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dvm:DvMF_2895 methyl-viologen-reducing hydrogenase delta subunit.
 
 
 0.974
Dde_1212
KEGG: dba:Dbac_0853 hydrogenase, putative.
 
   0.909
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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