STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1250TIGRFAM: Glutamate synthase (NADPH), homotetrameric; KEGG: dvm:DvMF_0938 putative oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region. (476 aa)    
Predicted Functional Partners:
Dde_1251
PFAM: Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dvl:Dvul_0767 ferredoxin-NADP(+) reductase subunit alpha.
 
 0.998
Dde_3636
PFAM: Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dvm:DvMF_0937 ferredoxin-NADP(+) reductase subunit alpha.
 
 0.992
Dde_1814
KEGG: dvm:DvMF_0546 glutamate synthase (NADPH); PFAM: Glutamate synthase, central-C; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Belongs to the glutamate synthase family.
 
 0.989
Dde_1815
PFAM: Glutamine amidotransferase, class-II; KEGG: dvm:DvMF_0545 glutamine amidotransferase class-II.
 
 
 0.934
Dde_1816
PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: dvm:DvMF_0544 glutamate synthase alpha subunit domain protein.
 
 
 0.930
Dde_2086
KEGG: dvl:Dvul_1521 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region.
  
  
 
0.924
Dde_0104
TIGRFAM: Glutamine synthetase type I; KEGG: dvm:DvMF_2099 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp.
  
 
 0.923
Dde_0054
Proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 0.921
carB
SMART: MGS-like; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; KEGG: dvm:DvMF_2306 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; Carbamoyl phosphate synthase, large subunit, N-terminal; Belongs to the CarB family.
  
 
 0.918
Dde_0102
PFAM: Glutamine synthetase, catalytic region; KEGG: dvm:DvMF_1590 glutamine synthetase catalytic region.
    
 0.911
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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