STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1359KEGG: dvm:DvMF_2985 radical SAM domain protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB. (646 aa)    
Predicted Functional Partners:
Dde_1357
PFAM: Uncharacterized protein family UPF0310; KEGG: dba:Dbac_3203 protein of unknown function DUF55.
  
    0.642
Dde_4021
KEGG: dba:Dbac_1387 hypothetical protein.
       0.548
Dde_0536
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.537
Dde_1360
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold-4; Signal transduction response regulator, receiver region; KEGG: dvu:DVU2412 sensory box histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS; Signal transduction response regulator, receiver region.
     
 0.519
Dde_1358
KEGG: dvl:Dvul_0817 hypothetical protein.
       0.465
slyX
SlyX family protein; PFAM: SlyX; KEGG: dvm:DvMF_2982 SlyX family protein; Belongs to the SlyX family.
       0.431
Dde_1361
PFAM: Protein of unknown function DUF342; KEGG: das:Daes_0742 hypothetical protein.
       0.418
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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