STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1474PFAM: Cytochrome c assembly protein; KEGG: dvm:DvMF_3129 cytochrome c assembly protein. (230 aa)    
Predicted Functional Partners:
Dde_1475
PFAM: Cytochrome c-type biogenesis protein CcmB; KEGG: dvm:DvMF_3130 cytochrome c-type biogenesis protein CcmB.
 
 0.999
Dde_1478
Cytochrome c biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.992
Dde_1477
PFAM: Cytochrome c assembly protein; KEGG: dvm:DvMF_3132 cytochrome c assembly protein.
 
  
 0.952
Dde_1476
Heme-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvl:Dvul_1944 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
  
  0.940
Dde_2837
TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dvl:Dvul_2236 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase.
  
    0.870
Dde_1473
KEGG: dvm:DvMF_3127 tetratricopeptide TPR_2 repeat protein.
 
  
 0.655
tatC
Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
 
   
 0.624
Dde_2114
PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dvm:DvMF_0475 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
 
  
 0.588
Dde_2781
Thioredoxin domain-containing protein; PFAM: Thioredoxin domain; KEGG: das:Daes_0507 thioredoxin domain-containing protein.
  
  
 0.533
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
  
 0.508
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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