STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_1968KEGG: dvm:DvMF_0363 TRASH domain protein. (100 aa)    
Predicted Functional Partners:
Dde_1974
KEGG: dvm:DvMF_0357 histidine triad (HIT) protein.
 
     0.816
Dde_1035
KEGG: dvm:DvMF_0962 hypothetical protein.
  
     0.774
Dde_0979
KEGG: dvm:DvMF_1183 hypothetical protein.
  
     0.767
Dde_2441
KEGG: dvm:DvMF_3088 hypothetical protein.
  
     0.765
Dde_3136
PFAM: Protein of unknown function DUF721; KEGG: dvl:Dvul_2350 hypothetical protein.
  
     0.764
Dde_2292
KEGG: dvl:Dvul_1811 hypothetical protein.
  
     0.763
Dde_1634
KEGG: dvm:DvMF_0611 hypothetical protein.
  
     0.761
Dde_2440
KEGG: dvm:DvMF_3089 putative lipoprotein.
  
     0.757
Dde_1011
KEGG: dvm:DvMF_2846 hypothetical protein.
  
     0.756
Dde_1010
KEGG: dvm:DvMF_2846 hypothetical protein.
  
     0.755
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.