STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2042TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvm:DvMF_0282 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation. (445 aa)    
Predicted Functional Partners:
Dde_3060
UDP-glucuronate decarboxylase; KEGG: dvm:DvMF_1312 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
 0.991
Dde_0033
UDP-N-acetylglucosamine 4-epimerase; KEGG: dvm:DvMF_2048 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
 
 0.974
Dde_1518
TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; PFAM: Nucleotidyl transferase.
  
 0.974
Dde_3691
dTDP-glucose 4,6-dehydratase; KEGG: sku:Sulku_2396 nad-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
 
 0.960
Dde_2888
UDP-glucose 4-epimerase; KEGG: dba:Dbac_3287 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase.
 
 0.959
Dde_0427
UDP-glucose 4-epimerase; KEGG: dvu:DVU2996 NAD-dependent epimerase/dehydratase family protein; PFAM: NAD-dependent epimerase/dehydratase.
 
 0.956
Dde_3686
PFAM: NAD-dependent epimerase/dehydratase; KEGG: dvl:Dvul_2641 NAD-dependent epimerase/dehydratase.
  
 0.951
Dde_2187
TIGRFAM: UDP-glucose 4-epimerase; KEGG: dvu:DVU1360 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.946
Dde_2693
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.939
Dde_1315
KEGG: dvm:DvMF_3172 UTP--glucose-1-phosphate uridylyltransferase; PFAM: UTP--glucose-1-phosphate uridylyltransferase.
     
 0.914
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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