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ksgA protein (Desulfovibrio alaskensis) - STRING interaction network
"ksgA" - Ribosomal RNA small subunit methyltransferase A in Desulfovibrio alaskensis
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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ksgARibosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (280 aa)    
Predicted Functional Partners:
Dde_0017
PFAM- Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG- dvu-DVU3363 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (444 aa)
 
   
  0.928
tsaD
tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family (367 aa)
 
   
  0.922
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (208 aa)
     
 
  0.902
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (309 aa)
 
 
  0.889
rpsI
PFAM- Ribosomal protein S9; KEGG- dvm-DvMF_0970 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
 
 
  0.889
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy (123 aa)
 
 
  0.887
Dde_2060
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); KEGG- dpr-Despr_1891 trehalose 6-phosphate synthase; PFAM- Glycosyl transferase, family 20 (484 aa)
              0.887
ftsJ
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (207 aa)
   
 
  0.873
Dde_1991
PFAM- NUDIX hydrolase domain; KEGG- dvm-DvMF_0346 NUDIX hydrolase (184 aa)
       
  0.857
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1375 aa)
   
   
  0.842
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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