STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgAGlycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (487 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.999
Dde_0510
4-alpha-glucanotransferase; TIGRFAM: Glycoside hydrolase, family 77; KEGG: dvm:DvMF_1705 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77.
 
 
 0.982
Dde_2353
Trehalose synthase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; KEGG: tro:trd_1931 alpha amylase, catalytic subdomain; PFAM: Glycosyl hydrolase, family 13, catalytic region.
  
  
 0.974
Dde_3088
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
  
 0.948
Dde_0881
PFAM: Glycosyl transferase, group 1; KEGG: dol:Dole_2052 glycosyl transferase group 1.
     
 0.903
Dde_0999
Malto-oligosyltrehalose trehalohydrolase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: mta:Moth_1809 malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region.
 
  
 0.899
Dde_1424
TIGRFAM: Alpha-glucan phosphorylase; KEGG: dvm:DvMF_3147 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35.
 
  
 0.881
Dde_2682
PFAM: Glycoside hydrolase, family 13, N-terminal; KEGG: dvl:Dvul_2047 isoamylase N-terminal domain-containing protein.
  
  
 0.800
Dde_2287
PFAM: NUDIX hydrolase domain; KEGG: dsa:Desal_2793 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.744
Dde_3597
PFAM: Phosphoglucose isomerase (PGI); KEGG: dvm:DvMF_2202 glucose-6-phosphate isomerase.
  
  
 0.627
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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