STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2365PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_2736 type II secretion system protein. (324 aa)    
Predicted Functional Partners:
Dde_2364
PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_2737 type II secretion system protein.
 
  
0.989
Dde_2359
TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain; KEGG: dvm:DvMF_2742 Flp pilus assembly protein CpaB; SMART: SAF domain.
 
  
 0.985
Dde_2363
PFAM: Type II secretion system protein E; KEGG: dvm:DvMF_2738 type II secretion system protein E.
 
  
 0.983
Dde_2362
KEGG: dvm:DvMF_2739 response regulator receiver protein.
 
  
 0.978
Dde_2360
PFAM: Type II/III secretion system; Transport-associated; KEGG: dvm:DvMF_2741 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.967
Dde_2358
PFAM: Peptidase A24A, prepilin type IV; KEGG: dvl:Dvul_1114 peptidase A24A, prepilin type IV.
 
   
 0.925
Dde_2357
PFAM: Flp/Fap pilin component; KEGG: dvl:Dvul_1115 Flp/Fap pilin component.
 
  
 0.871
Dde_2369
TadE family protein; PFAM: TadE-like; KEGG: dvl:Dvul_1103 TadE family protein.
 
    0.861
Dde_2366
Sporulation domain-containing protein; PFAM: Sporulation/cell division region, bacteria; Tetratricopeptide TPR-1; KEGG: dvm:DvMF_2735 TPR repeat-containing protein.
 
   
 0.848
Dde_2367
TadE family protein; PFAM: TadE-like; KEGG: dvm:DvMF_2734 TadE family protein.
  
    0.846
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.