STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2808PFAM: Magnesium chelatase, ChlI subunit; KEGG: dvm:DvMF_2719 competence protein ComM, putative. (228 aa)    
Predicted Functional Partners:
Dde_2773
PFAM: Magnesium chelatase, ChlI subunit; KEGG: dvl:Dvul_2256 Mg chelatase, subunit ChlI.
 
     0.976
Dde_1581
KEGG: das:Daes_1865 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A.
 
 0.840
Dde_0784
PFAM: Phosphoribosyltransferase; KEGG: dvm:DvMF_2857 phosphoribosyltransferase.
 
  
 0.823
Dde_1093
PFAM: Uncharacterized protein family UPF0102; KEGG: dvm:DvMF_2881 hypothetical protein; Belongs to the UPF0102 family.
 
  
 0.768
Dde_0547
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: das:Daes_1194 DNA internalization-like competence protein ComEC/Rec2; SMART: Beta-lactamase-like.
 
  
 0.594
Dde_3159
KEGG: dvl:Dvul_2429 hypothetical protein; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal.
   
   0.549
Dde_2809
KEGG: dap:Dacet_1948 hypothetical protein.
       0.488
Dde_3158
KEGG: dvl:Dvul_2428 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; Belongs to the flagella basal body rod proteins family.
   
   0.444
Dde_1941
KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
  
  
 0.425
Dde_3154
PFAM: Peptidase M23; Flagellar protein FlgJ, N-terminal; KEGG: dma:DMR_31520 peptidase M23B family protein.
 
   0.419
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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