STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3544KEGG: dsa:Desal_0294 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB. (464 aa)    
Predicted Functional Partners:
Dde_3547
KEGG: dsa:Desal_0291 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region.
     0.960
Dde_3543
C_GCAxxG_C_C family protein; PFAM: CGCAxxGCC motif; KEGG: dvl:Dvul_1578 hypothetical protein.
 
     0.954
Dde_3540
PFAM: Amine oxidase; Cysteine-rich region, CCG; KEGG: dvu:DVU1558 hypothetical protein.
 
   
 0.938
Dde_3541
KEGG: dsa:Desal_0297 hypothetical protein.
 
     0.932
Dde_3546
XshC-Cox1-family protein; PFAM: XdhC- CoxI; KEGG: dvl:Dvul_1581 hypothetical protein.
 
     0.920
Dde_3542
PFAM: Methyltransferase type 11; KEGG: dvu:DVU1556 hypothetical protein.
 
     0.919
Dde_3539
KEGG: dvl:Dvul_1574 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Ferredoxin; [2Fe-2S]-binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead.
 
     0.905
Dde_3545
Coenzyme F390 synthetase family, putatively involved in CO dehydrogenase maturation; PFAM: AMP-dependent synthetase/ligase; KEGG: dvu:DVU1553 AMP-binding protein.
 
     0.902
Dde_3538
Molybdopterin binding domain-containing protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
     0.521
Dde_3550
PFAM: Phosphoglycerate mutase; KEGG: dvl:Dvul_1583 phosphoglycerate mutase.
 
     0.481
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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