STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3655Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (413 aa)    
Predicted Functional Partners:
Dde_3653
Galactokinase; KEGG: dsa:Desal_0507 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase.
 
 0.997
Dde_3654
KEGG: dsa:Desal_0506 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI.
 
   
 0.942
Dde_3652
TIGRFAM: Galactose-1-phosphate uridyl transferase, class I; KEGG: dsa:Desal_0508 galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal; Galactose-1-phosphate uridyl transferase, N-terminal.
 
 
 0.925
Dde_1461
Glucokinase; KEGG: das:Daes_1428 glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.913
Dde_3656
Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: dsa:Desal_0504 ABC transporter; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
 
  
 0.723
Dde_2522
PfkB domain protein; PFAM: Carbohydrate/purine kinase; KEGG: dsa:Desal_0500 PfkB domain protein.
 
  
 0.611
Dde_3657
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dsa:Desal_0503 extracellular solute-binding protein family 1.
 
   
 0.546
Dde_2523
KEGG: tte:TTE1983 phosphatase/phosphohexomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase.
 
  
 0.532
Dde_3658
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dsa:Desal_0502 binding-protein-dependent transport systems inner membrane component.
 
  
 0.523
Dde_2187
TIGRFAM: UDP-glucose 4-epimerase; KEGG: dvu:DVU1360 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 0.501
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.