STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12086.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
EAT13608.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
 
 0.945
SdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
 
     0.718
EAT12085.1
Aminomethyl transferase, putative; COG0354 Predicted aminomethyltransferase related to GcvT; Belongs to the GcvT family.
 
     0.679
SdhC
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
 
   
 0.619
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.569
EAT12128.1
Anti-sigma factor MucA; COG3073 Negative regulator of sigma E activity.
 
     0.563
EAT12084.1
Hypothetical protein; COG1639 Predicted signal transduction protein.
 
   
 0.561
EAT13607.1
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
 
  
 0.542
zapE
Hypothetical protein; Reduces the stability of FtsZ polymers in the presence of ATP.
 
     0.506
EAT12166.1
COG2825 Outer membrane protein.
 
     0.499
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.