STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10705.1COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (526 aa)    
Predicted Functional Partners:
FlgG
COG4786 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
  
 
 0.821
EAT10704.1
Putative binding protein component ofABC transporter; COG4166 ABC-type oligopeptide transport system, periplasmic component.
     
 0.717
EAT10706.1
COG0500 SAM-dependent methyltransferases.
     
 0.674
rnhA
RNase H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.653
EAT10764.1
Membrane protein; Related to metalloendopeptidase; COG0739 Membrane proteins related to metalloendopeptidases.
 
  
 0.644
EAT12037.1
Hypothetical protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.
  
    0.634
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
       0.634
EAT10703.1
Short-chain dehydrogenase/reductase SDR; COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH).
       0.603
rlpA
Lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.596
EAT12294.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
 
  
 0.593
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.