STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12681.1Response regulator; COG0784 FOG: CheY-like receiver. (142 aa)    
Predicted Functional Partners:
EAT12680.1
COG0642 Signal transduction histidine kinase.
 
 
 
 0.960
EAT12600.1
COG0642 Signal transduction histidine kinase.
  
 
 0.839
EAT11365.1
COG0642 Signal transduction histidine kinase.
  
 
 0.839
EAT12983.1
Putative sensor protein; COG0642 Signal transduction histidine kinase.
  
 
 0.839
EAT12607.1
Hypothetical protein; COG2198 FOG: HPt domain.
  
 
 0.826
EAT11679.1
Sensory box histidine kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.812
EAT12682.1
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
       0.783
EAT12684.1
Putative HAMP domain/GGDEF domain/EAL domain protein; COG2199 FOG: GGDEF domain.
  
  
 0.628
EAT13834.1
Aerotaxis receptor Aer-2; COG2202 FOG: PAS/PAC domain.
 
 
 0.553
EAT13337.1
COG0642 Signal transduction histidine kinase.
  
 
 0.528
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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