Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0943 | PA4667 | PA0943 | PA4667 | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.776 |
| PA0943 | PA5363 | PA0943 | PA5363 | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.439 |
| PA0943 | PA5551 | PA0943 | PA5551 | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.453 |
| PA0943 | fimV | PA0943 | PA3115 | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | Motility protein FimV; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.623 |
| PA0943 | lolB | PA0943 | PA4668 | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | Probable lipoprotein localization protein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.645 |
| PA1011 | PA4667 | PA1011 | PA4667 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.633 |
| PA4667 | PA0943 | PA4667 | PA0943 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | 0.776 |
| PA4667 | PA1011 | PA4667 | PA1011 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.633 |
| PA4667 | PA5363 | PA4667 | PA5363 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.705 |
| PA4667 | PA5551 | PA4667 | PA5551 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.705 |
| PA4667 | fimV | PA4667 | PA3115 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Motility protein FimV; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.653 |
| PA4667 | hemA | PA4667 | PA4666 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.627 |
| PA4667 | ipk | PA4667 | PA4669 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Isopentenyl monophosphate kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.845 |
| PA4667 | lolB | PA4667 | PA4668 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable lipoprotein localization protein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.912 |
| PA4667 | popB | PA4667 | PA1708 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Translocator protein PopB; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.743 |
| PA4667 | prfA | PA4667 | PA4665 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.614 |
| PA5363 | PA0943 | PA5363 | PA0943 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | 0.439 |
| PA5363 | PA4667 | PA5363 | PA4667 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.705 |
| PA5363 | PA5551 | PA5363 | PA5551 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.924 |
| PA5551 | PA0943 | PA5551 | PA0943 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. | 0.453 |
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