node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
def | rl17 | SMU_143c | SMU_2000 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | 0.845 |
def | rl22 | SMU_143c | SMU_2022 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.932 |
def | ropA | SMU_143c | SMU_91 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Peptidyl-prolyl isomerase RopA (trigger factor); Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.865 |
def | rplD | SMU_143c | SMU_2024c | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.829 |
def | rplU | SMU_143c | SMU_846 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.852 |
def | rpsD | SMU_143c | SMU_2135c | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.829 |
def | rpsO | SMU_143c | SMU_154 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.843 |
def | rpsP | SMU_143c | SMU_865 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S16; Best Blastp Hit: dbj|BAB06202.1| (AP001515) ribosomal protein S16 (BS17) [Bacillus halodurans]; Belongs to the bacterial ribosomal protein bS16 family. | 0.831 |
def | rpsU | SMU_143c | SMU_818 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Best Blastp Hit: pir||T43742 ribosomal protein S21 [imported] - Listeria monocytogenes >gi|5689043|dbj|BAA82793.1| (AB023064) 30S ribosomal protein S21 [Listeria monocytogenes]; Belongs to the bacterial ribosomal protein bS21 family. | 0.844 |
def | rs20 | SMU_143c | SMU_1127 | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.852 |
rl17 | def | SMU_2000 | SMU_143c | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | Putative polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.845 |
rl17 | rl22 | SMU_2000 | SMU_2022 | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
rl17 | ropA | SMU_2000 | SMU_91 | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | Peptidyl-prolyl isomerase RopA (trigger factor); Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.918 |
rl17 | rplD | SMU_2000 | SMU_2024c | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rl17 | rplU | SMU_2000 | SMU_846 | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rl17 | rpsD | SMU_2000 | SMU_2135c | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rl17 | rpsO | SMU_2000 | SMU_154 | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
rl17 | rpsP | SMU_2000 | SMU_865 | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | 30S ribosomal protein S16; Best Blastp Hit: dbj|BAB06202.1| (AP001515) ribosomal protein S16 (BS17) [Bacillus halodurans]; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rl17 | rpsU | SMU_2000 | SMU_818 | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | Best Blastp Hit: pir||T43742 ribosomal protein S21 [imported] - Listeria monocytogenes >gi|5689043|dbj|BAA82793.1| (AB023064) 30S ribosomal protein S21 [Listeria monocytogenes]; Belongs to the bacterial ribosomal protein bS21 family. | 0.995 |
rl17 | rs20 | SMU_2000 | SMU_1127 | Best Blastp Hit: sp|P20277|RL17_BACSU 50S RIBOSOMAL PROTEIN L17 (BL15) (BL21) >gi|80370|pir||F32307 ribosomal protein L17 - Bacillus subtilis >gi|142464|gb|AAA22218.1| (M26414) ribosomal protein L17 [Bacillus subtilis] >gi|1044992|gb|AAB06827.1| (L47971) ribosomal protein L17 [Bacillus subtilis] >gi|2632411|emb|CAB11920.1| (Z99104) ribosomal protein L17 (BL15) [Bacillus subtilis]. | Putative 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.996 |