STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCACVL1_15455Tryptophan synthase. (477 aa)    
Predicted Functional Partners:
CCACVL1_14429
Tryptophan synthase, alpha chain; Belongs to the TrpA family.
 0.999
CCACVL1_03182
Ribulose-phosphate binding barrel.
 
 
 0.994
CCACVL1_30642
Uncharacterized protein.
 
 
 0.987
CCACVL1_23852
Anthranilate synthase/para-aminobenzoate synthase, glutamine amidotransferase.
 
 
 0.984
CCACVL1_24491
Glycosyl transferase, family 3.
 
 
 0.979
CCACVL1_14495
Glycosyl transferase, family 3.
  
 
 0.956
CCACVL1_12132
Threonine dehydratase.
  
 0.940
CCACVL1_01614
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
     
 0.922
CCACVL1_28850
Phosphoserine phosphatase SerB.
  
 
 0.920
CCACVL1_04870
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
     
 0.918
Your Current Organism:
Corchorus capsularis
NCBI taxonomy Id: 210143
Other names: C. capsularis, jute
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.