STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4159PilD processed protein. (193 aa)    
Predicted Functional Partners:
mshE
MSHA pilus assembly ATPase MshE.
 
 
 0.790
mshG
MSHA biogenesis protein MshG.
 
  
 0.785
mshJ
MSHA biogenesis protein MshJ.
 
   
 0.767
mshL
MSHA system outer membrane secretin MshL.
 
  
 0.764
mshI1
MSHA biogenesis protein MshI1.
 
   
 0.737
mshO
MshA minor pilin protein MshO.
 
     0.715
gspF
T2aSS secretion system inner membrane platform protein GspF.
 
  
 0.714
mshI2
MSHA biogenesis protein MshI2.
 
  
 0.703
gspE
T2aSS secretion system assembly ATPase GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.697
gspJ
T2aSS secretion system protein GspJ.
 
 
 0.649
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.