STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB64151.1Transcriptional regulator, MarR family. (152 aa)    
Predicted Functional Partners:
AKB64152.1
Transcriptional regulator, TrmB family.
 
   
 0.713
AKB64153.1
MATE family drug/sodium antiporter.
  
  
 0.515
AKB64813.1
Transmembrane efflux protein.
  
     0.503
AKB63842.1
Nitroreductase family protein.
 
 
 0.458
AKB64572.1
Ferredoxin.
 
 
 0.458
AKB65687.1
5,10-methylenetetrahydromethanopterin reductase.
 
 
  0.405
AKB65098.1
5,10-methylenetetrahydromethanopterin reductase.
 
 
  0.401
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.