STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUM_17880Phage minor structural protein GP20. (177 aa)    
Predicted Functional Partners:
RUM_17800
Bacteriophage Gp15 protein.
  
    0.779
RUM_17870
P22 coat protein-gene protein 5.
       0.753
RUM_17820
Hypothetical protein.
       0.736
RUM_17850
Hypothetical protein.
       0.736
RUM_17830
Hypothetical protein.
       0.735
RUM_17840
Minor capsid.
       0.729
RUM_17860
Hypothetical protein.
       0.711
RUM_17810
Hypothetical protein.
       0.639
RUM_17900
Phage minor capsid protein 2.
  
    0.596
RUM_17920
Phage terminase, large subunit, PBSX family.
  
    0.491
Your Current Organism:
Ruminococcus champanellensis
NCBI taxonomy Id: 213810
Other names: R. champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis 18P13, Ruminococcus champanellensis 18P13 = JCM 17042, Ruminococcus champanellensis DSM 18848, Ruminococcus champanellensis JCM 17042, Ruminococcus champanellensis JCM 17042 = 18P13, Ruminococcus sp. 18P13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.