STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
b3904Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L- mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1-hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate; Belongs to the rhamnulokinase family (485 aa)    
Predicted Functional Partners:
b3902
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde; Belongs to the aldolase class II family. RhaD subfamily
 
 
 0.999
b3903
Similar to Escherichia coli L-rhamnose isomerase RhaA SW:RHAA_ECOLI (P32170) (419 aa) fasta scores: E(): 0,85.2% id in 418 aa
 
 0.999
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose
 
   
 0.951
b3905
HTH-type transcriptional activator RhaS; Activates expression of the rhaBAD and rhaT operons
 
  
 0.930
lyx
Putative L-xylulose kinase; Similar to Escherichia coli cryptic L-xylulose kinase Lyx or LyxK or XylK or SgbK SW:LYXK_ECOLI (P37677) (498 aa) fasta scores: E(): 0, 42.8% id in 495 aa, and to Haemophilus influenzae probable L-xylulose kinase Lyx or LyxK or SgbK or Hi1027 SW:LYXK_HAEIN (P44991) (485 aa) fasta scores: E(): 0, 39.5% id in 499 aa
  
 
0.930
rhaT
L-rhamnose-proton symporter; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system)
 
  
 0.926
b3906
HTH-type transcriptional activator RhaR; Activates expression of the rhaSR operon in response to L-rhamnose
 
  
 0.910
YPO0995
Sodium:galactoside symporter family protein; Similar to Salmonella typhimurium melibiose permease MelB SW:MELB_SALTY (P30878) (476 aa) fasta scores: E(): 8.4e-25, 31.3% id in 451 aa, and to Bacillus subtilis hypothetical symporter YnaJ SW:YNAJ_BACSU (P94488) (463 aa) fasta scores: E(): 0, 31.5% id in 445 aa
 
   
 0.747
araB
Ribulokinase; Similar to Escherichia coli L-ribulokinase AraB SW:KIRI_ECOLI (P08204) (565 aa) fasta scores: E(): 0, 72.2% id in 553 aa, and to Salmonella typhimurium L-ribulokinase AraB SW:KIRI_SALTY (P06188) (569 aa) fasta scores: E(): 0,72.2% id in 551 aa; Belongs to the ribulokinase family
     
 0.731
YPO0327
Probable alcohol dehydrogenase; Similar to Bacillus methanolicus NAD-dependent methanol dehydrogenase Mdh SW:MEDH_BACMT (P31005) (380 aa) fasta scores: E(): 0, 42.9% id in 378 aa and to Escherichia coli probable alcohol dehydrogenase YiaY SW:ADH2_ECOLI (P37686) (382 aa) fasta scores: E(): 0, 43.6% id in 376 aa
 
  
 0.719
Your Current Organism:
Yersinia pestis CO92
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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