STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguASimilar to Pseudomonas aeruginosa conserved hypothetical protein PA0292 TR:AAG03681 (EMBL:AE004467) (368 aa) fasta scores: E(): 0, 57.5% id in 358 aa, and to eukaryotic Arabidopsis thaliana hypothetical protein T22D6_110 TR:Q9LEZ0 (EMBL:AL357612) (383 aa) fasta scores: E(): 0, 51.4% id in 368 aa. (371 aa)    
Predicted Functional Partners:
YPO0938
Putative carbon-nitrogen hydrolase; Similar to Pseudomonas aeruginosa probable hydratase PA0293 TR:AAG03682 (EMBL:AE004467) (292 aa) fasta scores: E(): 0, 63.9% id in 291 aa, and to eukaryoyic Lycopersicon esculentum (Tomato) beta-alanine synthase TR:Q9XGI9 (EMBL:Y19104) (300 aa) fasta scores: E(): 0, 60.1% id in 288 aa.
 
 0.998
speA
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
  
 0.984
YPO3671
Putative carbon-nitrogen hydrolase; Similar to Mus musculus nitrilase 1 nit1 TR:Q9R1N4 (EMBL:AF069988) (323 aa) fasta scores: E(): 0, 38.4% id in 284 aa, and to Vibrio cholerae hypothetical protein Vc0421 vc0421 TR:Q9KUU4 (EMBL:AE004129) (275 aa) fasta scores: E(): 0, 48.1% id in 270 aa.
 
 
 0.655
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.625
gabT
Similar to Escherichia coli 4-aminobutyrate aminotransferase GoaG SW:GOAG_ECOLI (P50457) (421 aa) fasta scores: E(): 0, 65.7% id in 428 aa, and to Pseudomonas aeruginosa 4-aminobutyrate aminotransferase GabT TR:AAG03655 (EMBL:AE004465) (426 aa) fasta scores: E(): 0,53.0% id in 423 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.547
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.528
nadC
Similar to Escherichia coli nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC SW:NADC_ECOLI (P30011) (296 aa) fasta scores: E(): 0, 68.2% id in 302 aa,and to Salmonella typhimurium nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC SW:NADC_SALTY (P30012) (296 aa) fasta scores: E(): 0, 72.8% id in 301 aa; Belongs to the NadC/ModD family.
   
    0.527
adgA
Putative glutamine-dependent NAD; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.512
potA
Putitive ABC-transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
  
 0.510
YPO1201
Putative amino acid decarboxylase; Similar to Escherichia coli biodegradative arginine decarboxylase AdiA or Adi SW:ADIA_ECOLI (P28629) (755 aa) fasta scores: E(): 0, 52.4% id in 757 aa, and to Vibrio cholerae ornithine decarboxylase, inducible VCA1063 TR:Q9KKN9 (EMBL:AE004431) (720 aa) fasta scores: E(): 0,34.0% id in 633 aa.
  
 
 0.502
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.