STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO1326TrkA, Potassium channel-family protein; Similar to Escherichia coli hypothetical protein HI0035 TR:P75812 (EMBL:AE000187) (561 aa) fasta scores: E(): 0, 90.0% id in 560 aa, and to Vibrio cholerae hypothetical protein VC1145 TR:Q9KSW1 (EMBL:AE004194) (558 aa) fasta scores: E(): 0, 65.1% id in 559 aa. (562 aa)    
Predicted Functional Partners:
YPO1064
Conserved hypothetical protein; Similar to Escherichia coli ROF protein SW:ROF_ECOLI (P52098) (84 aa) fasta scores: E(): 1.4e-26, 73.8% id in 84 aa.
  
     0.470
YPO3055
Putative membrane protein; Similar to Escherichia coli hypothetical protein TR:P77259 (EMBL:D90875) (66 aa) fasta scores: E(): 3e-18,66.7% id in 66 aa.
  
    0.463
YPO0174
Putative membrane protein; Similar to Escherichia coli hypothetical 79.5 kDa protein in crp-argD intergenic region YhfK SW:YHFK_ECOLI (P45537) (696 aa) fasta scores: E(): 0, 56.4% id in 707 aa.
  
     0.442
YPO1325
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein PA4382 TR:AAG07770 (EMBL:AE004854) (264 aa) fasta scores: E(): 1.6e-21, 34.1% id in 226 aa, and to Xylella fastidiosa hypothetical protein XF0374 TR:Q9PGC8 (EMBL:AE003889) (255 aa) fasta scores: E(): 1.8e-15, 30.9% id in 220 aa.
  
    0.440
con
Putative outer membrane porin A protein; With TolR probably plays a role in maintaining the position of the peptidoglycan cell wall in the periplasm. Acts as a porin with low permeability that allows slow penetration of small solutes; an internal gate slows down solute passage.
  
    0.431
YPO1324
Putative permease; Similar to Bacillus licheniformis bacitracin transport permease protein BcrC SW:BCRC_BACLI (P42334) (203 aa) fasta scores: E(): 1.4e-07, 30.0% id in 170 aa, and to Salmonella typhimurium putative permease Mig-13 TR:O30906 (EMBL:AF020809) (202 aa) fasta scores: E(): 0, 57.9% id in 197 aa.
  
    0.408
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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