STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katYCatalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity. (737 aa)    
Predicted Functional Partners:
cybC
Putative cytochrome B562; Electron-transport protein of unknown function.
  
  
 0.906
sodA
Superoxide dismutase [Mn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.784
sodC
Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 
 0.781
cybB
Similar to Escherichia coli cytochrome B561 CybB SW:C561_ECOLI (P08732) (176 aa) fasta scores: E(): 0, 66.3% id in 175 aa, and identical to the previously sequenced Yersinia pestis probable cytochrome B561 CybB SW:C561_YERPE (Q9X6B2) (176 aa) fasta scores: E(): 0, 100.0% id in 176 aa.
  
  
 0.779
sodB
Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.775
trxC
Thioredoxin 2; Similar to Escherichia coli thioredoxin 2 TrxC SW:THI2_ECOLI (P33636) (139 aa) fasta scores: E(): 0, 77.7% id in 139 aa, and to Vibrio cholerae thioredoxin 2 Vca0752 TR:Q9KLJ2 (EMBL:AE004403) (144 aa) fasta scores: E(): 0,53.6% id in 140 aa.
   
 
 0.712
fipA
Thioredoxin 1; Similar to Escherichia coli and Salmonella typhimurium thioredoxin 1 TrxA SW:THIO_ECOLI (P00274) (108 aa) fasta scores: E(): 0, 86.9% id in 107 aa, and to Vibrio cholerae thioredoxin VC0306 TR:Q9KV51 (EMBL:AE004119) (108 aa) fasta scores: E(): 0, 79.6% id in 108 aa; Belongs to the thioredoxin family.
   
 
 0.634
nam
Similar to Escherichia coli pyrazinamidase/nicotinamidase [includes: pyrazinamidase (EC 3.5.1.*) (PZAse); nicotinamidase(EC 3.5.1.19) (nicotine deamidase)] PncA SW:PNCA_ECOLI (P21369) (213 aa) fasta scores: E(): 0, 65.2% id in 201 aa, and to Vibrio cholerae pyrazinamidase/nicotinamidase vca0712 TR:Q9KLN1 (EMBL:AE004400) (206 aa) fasta scores: E(): 0, 48.3% id in 209 aa.
   
  
 0.620
katA
Catalase; Similar to many eg. Proteus mirabilis catalase KatA SW:CATA_PROMI (P42321) (484 aa) fasta scores: E(): 0, 84.9% id in 476 aa, and to Pseudomonas aeruginosa catalase KatA or PA4236 SW:CATA_PSEAE (O52762) (482 aa) fasta scores: E(): 0, 80.4% id in 479 aa.
  
 
 0.607
ybbN
Putative thioredoxin; Similar to Escherichia coli hypothetical 33.1 kDa protein in ushA-tesA intergenic region YbbN SW:YBBN_ECOLI (P77395) (296 aa) fasta scores: E(): 0, 71.6% id in 289 aa,and to Vibrio cholerae hypothetical protein Vc0977 TR:Q9KTC5 (EMBL:AE004179) (306 aa) fasta scores: E(): 0,40.8% id in 292 aa.
   
 
 0.606
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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