STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO3605Conserved hypothetical protein; Similar to Arabidopsis thaliana F15P11.1 protein TR:Q9S9U2 (EMBL:AF160760) (187 aa) fasta scores: E(): 0.024, 31.5% id in 143 aa. (177 aa)    
Predicted Functional Partners:
YPO3604
Hypothetical protein; No significant database hits.
 
    0.860
YPO3608
Putative exported protein; Similar to Escherichia coli CorE protein TR:O52666 (EMBL:AF044501) (1420 aa) fasta scores: E(): 8.3e-32, 27.7% id in 824 aa, and to Escherichia coli RhsD protein precursor SW:RHSD_ECOLI (P16919) (1426 aa) fasta scores: E(): 1.4e-28, 27.3% id in 842 aa.
  
  
 0.736
YPO3607
Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 8.9e-06, 24.8% id in 141 aa.
  
    0.716
YPO3606
Putative Rhs accessory genetic element; Similar to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 49.9% id in 579 aa, and to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0, 49.3% id in 576 aa. Similar to YPO3613 (78.0% identity in 803 aa overlap) and to YPO0764 (77.2% identity in 615 aa overlap).
  
    0.707
YPO3609
Similar to Escherichia coli hypothetical CorE protein RhsD TR:AAA24544 (EMBL:L19084) (1426 aa) fasta scores: E(): 4.6e-14, 28.3% id in 473 aa, and to Escherichia coli RhsE protein SW:RHSE_ECOLI (P24211) (682 aa) fasta scores: E(): 1.6e-14, 26.8% id in 522 aa.
  
  
 0.663
YPO3594
Conserved hypothetical protein (pseudogene); The 5'-region of this CDS has been deleted by either the original IS1661 insertion or by the subsequent insertion of a IS100 element. Similar to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0, 55.5% id in 245 aa and to Escherichia coli O157:H7 Z0260 hypothetical protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0,53.9% id in 245 aa.
  
 
  0.631
YPO3610
Conserved hypothetical protein; Similar to Bacillus subtilis YokK protein TR:O31996 (EMBL:Z99115) (192 aa) fasta scores: E(): 0.043, 26.6% id in 154 aa, and to Bacteriophage SPBc2 hypothetical protein YokK TR:O64025 (EMBL:AF020713) (192 aa) fasta scores: E(): 0.043, 26.6% id in 154 aa.
       0.624
YPO3603
Putative exported protein; Similar to Vibrio cholerae IcmF-related protein vca0120 TR:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 0, 37.3% id in 1183 aa.
  
 
 0.572
YPO3595
Similar to Vibrio cholerae hypothetical protein VCA0112 TR:Q9KN53 (EMBL:AE004353) (495 aa) fasta scores: E(): 3.8e-28, 31.3% id in 486 aa.
  
  
 0.532
YPO3597
Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 0, 49.0% id in 447 aa, and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0, 40.8% id in 448 aa.
  
 
 0.516
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.