STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO3613Putative Rhs accessory genetic element; Similar to Escherichia coli VgrE protein TR:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0, 46.7% id in 599 aa, and to Escherichia coli VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 51.2% id in 531 aa. Similar to YPO3606 (78.0% identity in 803 aa overlap) and to YPO0764 (76.2% identity in 621 aa overlap). (732 aa)    
Predicted Functional Partners:
YPO3603
Putative exported protein; Similar to Vibrio cholerae IcmF-related protein vca0120 TR:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 0, 37.3% id in 1183 aa.
 
  
 0.808
YPO3707
Similar to Escherichia coli hypothetical protein 498 TR:O52670 (EMBL:AF044503) (166 aa) fasta scores: E(): 0,62.0% id in 166 aa, and to Vibrio cholerae hypothetical protein VCA0107 TR:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 0, 61.3% id in 160 aa.
 
  
 0.803
YPO3614
Similar to Pseudomonas aeruginosa hypothetical protein PA0094 TR:AAG03484 (EMBL:AE004448) (144 aa) fasta scores: E(): 7e-07, 26.5% id in 136 aa.
  
  
 0.795
YPO3594
Conserved hypothetical protein (pseudogene); The 5'-region of this CDS has been deleted by either the original IS1661 insertion or by the subsequent insertion of a IS100 element. Similar to Vibrio cholerae hypothetical protein Vca0110 TR:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 0, 55.5% id in 245 aa and to Escherichia coli O157:H7 Z0260 hypothetical protein TR:AAG54529 (EMBL:AE005198) (616 aa) fasta scores: E(): 0,53.9% id in 245 aa.
 
 
  0.793
YPO3615
Putative membrane protein; Similar to Escherichia coli RhsC protein precursor SW:RHSC_ECOLI (P16918) (1397 aa) fasta scores: E(): 6.5e-20, 27.2% id in 1018 aa, and to Streptomyces coelicolor putative Rhs protein scd31.24 TR:Q9L0E3 (EMBL:AL161803) (927 aa) fasta scores: E(): 5.2e-31, 31.9% id in 889 aa.
 
  
 0.792
YPO3597
Similar to Vibrio cholerae hypothetical protein VCA0114 TR:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 0, 49.0% id in 447 aa, and to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0, 40.8% id in 448 aa.
 
    0.788
YPO0513
Similar to Pseudomonas aeruginosa hypothetical protein PA0079 TR:AAG03469 (EMBL:AE004447) (444 aa) fasta scores: E(): 0, 35.3% id in 445 aa, and to Pseudomonas aeruginosa hypothetical protein PA1667 TR:AAG05056 (EMBL:AE004594) (443 aa) fasta scores: E(): 0, 32.0% id in 450 aa.
 
    0.783
YPO2934
Hypothetical protein (pseudogene); No significant database matches to the full length CDS. N-terminal region similar to the N-terminus of Escherichia coli O157:H7 putative transcriptional regulator YggD TR:AAG58060 (EMBL:AE005523) (169 aa) fasta scores: E(): 0.92, 31.5% id in 149 aa. CDS translational stop lies within the downstream IS100 element. Therefore CDS is probably disrupted by the insertion (at the C-terminal end) of the IS100 element. It is not clear whether this insertion affects the function of the protein.
 
    0.781
YPO0504
Similar to Pseudomonas aeruginosa hypothetical protein PA0088 TR:AAG03478 (EMBL:AE004447) (619 aa) fasta scores: E(): 0, 29.0% id in 617 aa.
 
  
 0.780
YPO2938
Conserved hypothetical protein; Similar to Edwardsiella ictaluri putative hypothetical protein Eip55 TR:O52406 (EMBL:AF037441) (495 aa) fasta scores: E(): 0, 49.9% id in 495 aa, and to Vibrio cholerae hypothetical protein VCA0108 TR:Q9KN57 (EMBL:AE004353) (492 aa) fasta scores: E(): 0, 39.6% id in 498 aa. Similar to YPO0501 (61.4% identity in 479 aa overlap).
 
  
 0.779
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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