STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuDAlkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family. (382 aa)    
Predicted Functional Partners:
ssuE
Similar to Escherichia coli NAD(P)H-dependent FMN reductase SsuE SW:SSUE_ECOLI (P80644) (191 aa) fasta scores: E(): 0, 61.1% id in 175 aa, and to Pseudomonas putida NADH-dependent FMN reductase SsuE SW:SSUE_PSEPU (O85762) (200 aa) fasta scores: E(): 0, 55.9% id in 195 aa.
 
 0.998
ssuA
Similar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 0, 73.1% id in 316 aa.
 
 
 0.995
ssuC
Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC SW:SSUC_ECOLI (P75851) (263 aa) fasta scores: E(): 0, 79.9% id in 259 aa,and to Pseudomonas aeruginosa probable permease of ABC transporter Pa3443 TR:AAG06831 (EMBL:AE004765) (262 aa) fasta scores: E(): 0, 81.0% id in 263 aa.
 
 0.989
ssuB
Putative aliphatic sulfonates transport ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.984
YPO2287
Similar to Escherichia coli taurine transport system permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta scores: E(): 9.6e-26, 33.1% id in 251 aa, and to Methanococcus jannaschii putative ABC transporter permease protein MJ0413 SW:Y413_METJA (Q57856) (267 aa) fasta scores: E(): 3.2e-30, 39.2% id in 268 aa.
 
 
 0.946
irp1
Previously sequenced as Yersinia pestis yersiniabactin biosynthetic protein Irp1 TR:Q9Z373 (EMBL:AL031866) (3163 aa) fasta scores: E(): 0, 100.0% id in 3163 aa. Similar to Yersinia enterocolitica HMWP1 protein Irp1 TR:O54511 (EMBL:Y12527) (3161 aa) fasta scores: E(): 0, 97.9% id in 3163 aa.
   
 0.909
YPO2286
Conserved hypothetical protein; Similar to Deinococcus radiodurans putative ABC transporter, periplasmic substrate-binding protein DR1655 TR:Q9RTV1 (EMBL:AE002008) (337 aa) fasta scores: E(): 2e-09, 25.915% id in 328 aa, and to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA SW:SSUA_ECOLI (P75853) (319 aa) fasta scores: E(): 3.5e-07, 31.343% id in 201 aa.
 
 
 0.846
YPO0776
Putative siderophore biosysnthesis protein; Similar to N-terminus of Yersinia pestis yersiniabactin biogenesis protein Irp2 TR:Q9Z399 (EMBL:AL031866) (2041 aa) fasta scores: E(): 0, 31.1% id in 1659 aa, and to Pseudomonas aeruginosa pyochelin synthetase PchF TR:Q9RFM7 (EMBL:AF184622) (1809 aa) fasta scores: E(): 0, 34.1% id in 1957 aa. and to Vibrio anguillarum anguibactin biosynthesis protein AngR SW:ANGR_VIBAN (P19828) (1048 aa) fasta scores: E(): 0, 32.1% id in 844 aa. CDS contains a glutamine and threonine rich imperfect repeat region, residues 996 to 1065.
 
 
 0.832
ssiD
Putative taurine dioxygenase; Similar to Escherichia coli alpha-ketoglutarate-dependent taurine dioxygenase TauD SW:TAUD_ECOLI (P37610) (282 aa) fasta scores: E(): 0, 76.1% id in 280 aa, and to Pseudomonas aeruginosa taurine dioxygenase TauD TR:AAG07322 (EMBL:AE004811) (277 aa) fasta scores: E(): 0, 60.6% id in 274 aa.
 
 
 0.800
hpaC
Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase coupling protein HpaC TR:Q57501 (EMBL:Z29081) (170 aa) fasta scores: E(): 0, 72.0% id in 161 aa, and to Salmonella dublin HpaC TR:Q9RPU2 (EMBL:AF144422) (170 aa) fasta scores: E(): 0, 73.0% id in 159 aa.
 
 
 0.768
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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