STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBI1Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] (129 aa)    
Predicted Functional Partners:
Q5KF21_CRYNJ
Uncharacterized protein.
    
 0.996
Q5KI23_CRYNJ
Structural constituent of ribosome, putative.
  
 0.994
Q5KIG4_CRYNJ
Ribosomal chaperone, putative.
  
0.994
Q5K8G0_CRYNJ
Uncharacterized protein.
   
 0.992
Q5KNK2_CRYNJ
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.992
Q5KPZ1_CRYNJ
Ribosomal protein S3, putative; Belongs to the universal ribosomal protein uS3 family.
   
 0.991
Q5KIJ1_CRYNJ
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.990
Q5KNH2_CRYNJ
Ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family.
   
 0.990
Q5K959_CRYNJ
60s ribosomal protein l23, putative; Belongs to the universal ribosomal protein uL14 family.
   
 0.989
Q5KA19_CRYNJ
60s ribosomal protein l11, putative; Belongs to the universal ribosomal protein uL5 family.
   
 0.989
Your Current Organism:
Cryptococcus neoformans
NCBI taxonomy Id: 214684
Other names: C. neoformans var. neoformans JEC21, Cryptococcus neoformans JEC21, Cryptococcus neoformans var. neoformans JEC21, Cryptococcus neoformans var. neoformans serotype D JEC21, Cryptococcus neoformans var. neoformans strain JEC21, Filobasidiella neoformans var. neoformans strain JEC21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.