STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104935360Presenilin 1. (490 aa)    
Predicted Functional Partners:
psenen
Gamma-secretase subunit PEN-2.
    
 0.995
LOC104929614
Gamma-secretase subunit Aph-1b.
   
 0.982
NCSTN
Nicastrin.
   
 0.972
notch1
Neurogenic locus notch homolog protein 1 isoform X1.
    
 0.969
LOC104923664
Neurogenic locus notch homolog protein 1 isoform X1.
    
 0.969
LOC104928105
Catenin beta 1.
    
 0.967
LOC104918597
CAMP-dependent protein kinase catalytic subunit alpha isoform X2.
     
 0.956
prkaca
CAMP-dependent protein kinase catalytic subunit alpha.
     
 0.956
LOC104922057
Catenin beta 1.
    
 0.944
LOC104939462
Presenilin-2 isoform X2.
  
  
0.941
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.