STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104937829Syndecan 2. (286 aa)    
Predicted Functional Partners:
LOC104935293
Syndecan-2-A.
  
  
 
0.920
SDC4
Syndecan-4 isoform X2.
     
 
0.900
LOC104939945
Calcium/calmodulin-dependent serine protein kinase.
    
 0.703
CASK
Calcium/calmodulin-dependent serine protein kinase.
    
 0.703
il34
Interleukin 34.
     
 0.698
SDC3
Syndecan 3.
   
0.599
tecpr2
Tectonin beta-propeller repeat-containing protein 2 isoform X1.
      
 0.590
b4galt7
Xylosylprotein 4-beta-galactosyltransferase.
     
 0.556
ust
Dermatan/chondrotin sulfate uronyl 2-O-sulfotransferase UST.
     
 0.554
LOC104931455
Heparan sulfate 2-O-sulfotransferase HS2ST1.
     
 0.554
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.