STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104919718Ras-related protein Rab-6A isoform X2. (208 aa)    
Predicted Functional Partners:
RIC1
RAB6A-GEF complex partner protein 1.
    
 0.852
LOC104933312
Rab GDP dissociation inhibitor beta.
   
 0.792
LOC104923869
Rab GDP dissociation inhibitor alpha.
   
 0.792
LOC104923747
Rab GDP dissociation inhibitor beta.
   
 0.792
GCC2
GRIP and coiled-coil domain-containing protein 2.
    
 0.788
vps39
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.
    
 
 0.768
cog6
Conserved oligomeric Golgi complex subunit 6.
   
 0.748
vps53
Vacuolar protein sorting-associated protein 53 homolog.
    
 0.747
rgp1
RAB6A-GEF complex partner protein 2.
    
 0.720
cog8
Conserved oligomeric Golgi complex subunit 8.
    
 0.718
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.