STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104927102Cadherin 11, type 2, OB-cadherin. (818 aa)    
Predicted Functional Partners:
LOC104928105
Catenin beta 1.
    
 0.679
LOC104922277
Junction plakoglobin.
    
 0.610
LOC104933870
Junction plakoglobin.
    
 0.610
CTNND1
Catenin (cadherin-associated protein), delta 1.
    
 0.603
LOC104927691
Catenin (cadherin-associated protein), delta 1.
    
 0.603
ctnna2
Catenin alpha 2.
    
 0.601
ctnna1
Catenin alpha-1.
    
 0.601
ARVCF
ARVCF delta catenin family member.
    
 0.553
LOC104922057
Catenin beta 1.
    
 0.539
ctnnd2
Catenin delta-2 isoform X1.
    
 0.489
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.