STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLCRP00005039824Ubiquitin conjugating enzyme E2 A, like. (152 aa)    
Predicted Functional Partners:
LOC104919927
Ubiquitin-conjugating enzyme E2 variant 1-like isoform X2.
   
 0.991
rad18
E3 ubiquitin-protein ligase RAD18.
    
 0.973
leo1
RNA polymerase-associated protein LEO1.
    
 0.965
ubb
Polyubiquitin-B isoform X1.
   
 0.933
rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
   
 0.920
rnf20
E3 ubiquitin-protein ligase BRE1A.
    
 0.909
rnf40
E3 ubiquitin-protein ligase BRE1B isoform X1.
    
 0.909
trip12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 0.887
uba1
Ubiquitin-like modifier-activating enzyme 1.
   
 0.854
LOC104920505
Ubiquitin-like modifier-activating enzyme 1.
   
 0.854
Your Current Organism:
Larimichthys crocea
NCBI taxonomy Id: 215358
Other names: L. crocea, Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea, croceine croaker, large yellow croaker
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