STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMAR_0259Conserved hypothetical protein. (184 aa)    
Predicted Functional Partners:
MMAR_0256
Non-ribosomal peptide synthetase; Involved in lipid metabolism.
  
  
 0.989
MMAR_0260
Oxidoreductase; Function unknown, probably involved in cellular metabolism.
  
  
 0.983
MMAR_0257
Conserved hypothetical protein.
  
  
 0.968
fadD10
fatty-acid-CoA ligase FadD10; Function unknown, but involvement in lipid degradation.
  
  
 0.946
MMAR_0261
PPE family protein, PPE1.
  
  
 0.930
tauD
Taurine catabolism dioxygenase, TauD; In E. coli this enzyme catalyses the oxygenolytic release of sulfite from taurine.
  
  
 0.763
tauD_1
Gamma-butyrobetaine hydroxylase, TauD_1; Gamma-butyrobetaine hydroxylase is a 2-oxoglutarate- dependent dioxygenase that catalyzes the hydroxylation of gamma-butyrobetaine to carnitine, the last step in the biosynthesis of carnitine from lysine. reaction catalysed: 4-trimethylammoniobutanoate + 2-oxoglutarate + O(2) <=> 3- hydroxy-4-trimethylammoniobutanoate + succinate + CO(2).
  
  
 0.549
MMAR_3972
Non-ribosomal peptide synthetase; Contains an NRP-like adenylation domain.
  
  
 0.457
acrA1
Short-chain dehydrogenase, AcrA1; Multifunctional protein with fatty acyl-CoA reductase activity in C-terminal part.
  
  
 0.407
MMAR_0469
Involved in peptide synthesis and/or lipid metabolism.
  
  
 0.402
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.