STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMAR_5472Conserved hypothetical protein; Belongs to the Nudix hydrolase family. (248 aa)    
Predicted Functional Partners:
MMAR_5473
Conserved hypothetical secreted protein.
  
  
 0.930
pcnA
Poly(a) polymerase PcnA; Involved in transcription mechanism [catalytic activity: N ATP + (nucleotide)(M) = N diphosphate + (nucleotide)(M+N)]; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.757
MMAR_5474
Conserved transmembrane protein.
       0.753
MMAR_5470
Conserved hypothetical protein.
       0.738
sigM
The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.708
MMAR_5476
Conserved hypothetical alanine rich membrane protein.
     
 0.665
ogt
methylated-DNA--protein-cysteine methyltransferase Ogt; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
     
 0.489
MMAR_4229
Conserved hypothetical protein.
  
    0.484
MMAR_1975
Conserved hypothetical protein.
      
 0.474
MMAR_5164
Conserved regulatory protein; Involved in transcriptional mechanism.
 
  
 0.448
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.