STRINGSTRING
miaA protein (Rhizobium leguminosarum 3841) - STRING interaction network
"miaA" - tRNA dimethylallyltransferase in Rhizobium leguminosarum 3841
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaAtRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family (297 aa)    
Predicted Functional Partners:
hflX
GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis (441 aa)
 
   
  0.958
hflK
Protein HflK; HflC and HflK could encode or regulate a protease (360 aa)
   
  0.947
hflC
Protein HflC; HflC and HflK could regulate a protease (321 aa)
   
  0.940
serB
annotation not available (296 aa)
   
   
  0.900
idnK1
Gluconokinase; N-terminus to codon 130 is similar to the fragment of Rhizobium leguminosarum (biovar viciae) IdnK protein (ec 2.7.1.12) (fragment). UniProt-Q9AE40 (EMBL-RLE310184) (123 aa) fasta scores- E()=9.3e-37, 90.833% id in 120 aa, and to Escherichia coli IdnK thermosensitive gluconokinase (ec 2.7.1.12) (gluconate kinase 1). UniProt-IDNK_ECOLI (EMBL-S56494) (187 aa) fasta scores- E()=2.1e-21, 47.468% id in 158 aa (178 aa)
          0.804
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (272 aa)
 
 
  0.737
RL2052
annotation not available (542 aa)
 
   
  0.710
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (80 aa)
   
   
  0.685
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (917 aa)
 
   
  0.678
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (490 aa)
   
   
  0.675
Your Current Organism:
Rhizobium leguminosarum 3841
NCBI taxonomy Id: 216596
Other names: R. leguminosarum bv. viciae 3841, Rhizobium leguminosarum 3841, Rhizobium leguminosarum bv. viciae 3841, Rhizobium leguminosarum bv. viciae str. 3841, Rhizobium leguminosarum viciae 3841
Server load: low (12%) [HD]