STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
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[Homology]
Score
pepACytosolic aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (503 aa)    
Predicted Functional Partners:
pepN
Similar to Escherichia coli aminopeptidase N PepN or b0932 SWALL:AMPN_ECOLI (SWALL:P04825) (869 aa) fasta scores: E(): 0, 75.66% id in 867 aa.
   
 0.962
gshB
Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family.
   
 
 0.961
pepB
Peptidase B; Probably plays an important role in intracellular peptide degradation.
  
  
 
0.956
pepD
Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH or b0237 SWALL:PEPD_ECOLI (SWALL:P15288) (484 aa) fasta scores: E(): 1.4e-145, 77.27% id in 484 aa.
   
 
 0.954
gshA
Glutamate--cysteine ligase; Similar to Escherichia coli, and Escherichia coli O6 glutamate--cysteine ligase GshA or Gsh-I or b2688 or c3245 SWALL:GSH1_ECOLI (SWALL:P06980) (518 aa) fasta scores: E(): 1.3e-158, 73.15% id in 514 aa; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
 0.952
ggt
Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or b3447 SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): 2.3e-93, 46.93% id in 571 aa, and to Pseudomonas sp. gamma-glutamyltranspeptidase precursor Ggt SWALL:GGT_PSESP (SWALL:P36267) (575 aa) fasta scores: E(): 1.2e-114, 56.17% id in 591 aa.
     
 0.952
aatA
Similar to Rhizobium meliloti aspartate aminotransferase A AatA or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 5.9e-80, 50.62% id in 399 aa, and to Agrobacterium tumefaciens aspartate aminotransferase A AatA or atu4278 or agr_l_1171 SWALL:Q8U821 (EMBL:AE009356) (412 aa) fasta scores: E(): 7.9e-115, 72.04% id in 397 aa.
   
  0.948
cysK
Cysteine synthase A; Similar to Escherichia coli, and Escherichia coli O157:H7 cysteine synthase A CysK or CysZ or b2414 or z3680 or ecs3286 SWALL:CYSK_ECOLI (SWALL:P11096) (322 aa) fasta scores: E(): 1.4e-100, 89.13% id in 322 aa; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.946
ECA1156
Similar to Yersinia pestis putative pyridoxal-phosphate dependent protein ypo3147 or y1037 SWALL:Q8ZC75 (EMBL:AJ414155) (346 aa) fasta scores: E(): 1.4e-117, 83.47% id in 345 aa, and to Salmonella typhimurium putative cysteine synthase/cystathionine beta-synthase stm0458 SWALL:Q8ZRB5 (EMBL:AE008717) (351 aa) fasta scores: E(): 1.6e-105, 76.38% id in 343 aa.
    
  0.946
metC
Similar to Escherichia coli cystathionine beta-lyase MetC or b3008 SWALL:METC_ECOLI (SWALL:P06721) (395 aa) fasta scores: E(): 8.3e-124, 73.85% id in 394 aa.
   
 
  0.945
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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