STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0597Similar to Salmonella typhi hypothetical protein sty4592 SWALL:Q8Z1H4 (EMBL:AL627282) (649 aa) fasta scores: E(): 1.3e-115, 48.69% id in 651 aa. (653 aa)    
Predicted Functional Partners:
hsdS
Subunit S of type I restriction-modification system; Similar to Escherichia coli type i restriction enzyme EcoEI specificity protein HsdS or Hss SWALL:T1SE_ECOLI (SWALL:P19705) (594 aa) fasta scores: E(): 4.7e-62, 44.05% id in 606 aa, and to Salmonella enterica styski methylase HsdS SWALL:P95733 (EMBL:Y11005) (587 aa) fasta scores: E(): 6.2e-57, 40.95% id in 608 aa.
  
 
 0.855
ECA0596
Similar to Salmonella typhi hypothetical protein sty4591 SWALL:Q8Z1H5 (EMBL:AL627282) (152 aa) fasta scores: E(): 2.2e-30, 55.84% id in 154 aa. No other significant database matches.
       0.580
ECA0598
Similar to Salmonella typhi hypothetical protein sty4593 SWALL:Q8Z1H3 (EMBL:AL627282) (302 aa) fasta scores: E(): 7.9e-40, 41.33% id in 300 aa.
       0.563
virB10
Putative conjugal transfer protein; Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa.
  
     0.556
virB4
Putative conjugal transfer protein; Similar to Escherichia coli VirB4 protein VirB4 SWALL:Q91UX4 (EMBL:AJ297913) (826 aa) fasta scores: E(): 2.4e-90, 34.71% id in 818 aa.
 
     0.501
ECA2660
Similar to Yersinia pestis hypothetical protein Ypo1362 ypo1362 SWALL:Q8ZGD9 (EMBL:AJ414148) (555 aa) fasta scores: E(): 1.1e-152, 66.3% id in 555 aa, and to Escherichia coli hypothetical protein ybjd or b0876 SWALL:YBJD_ECOLI (SWALL:P75828) (552 aa) fasta scores: E(): 1.3e-148, 67.14% id in 554 aa.
  
  
 0.444
ECA0594
Similar to Salmonella typhi hypothetical protein sty4589 SWALL:Q8Z1H7 (EMBL:AL627282) (194 aa) fasta scores: E(): 1.3e-17, 35.02% id in 197 aa. No other significant database matches.
       0.438
ECA0595
Similar to Salmonella typhi hypothetical protein sty4590 SWALL:Q8Z1H6 (EMBL:AL627282) (98 aa) fasta scores: E(): 1.4e-11, 46.31% id in 95 aa. No other significant database matches.
       0.438
lhr
Similar to Escherichia coli probable ATP-dependent helicase Lhr or RhlF or b1653 SWALL:LHR_ECOLI (SWALL:P30015) (1538 aa) fasta scores: E(): 9.6e-156, 57.39% id in 1603 aa, and to Streptomyces coelicolor ATP dependent DNA helicase sco5761 or sc7c7.16C SWALL:O86821 (EMBL:AL939125) (1690 aa) fasta scores: E(): 3.8e-129, 51.11% id in 1479 aa.
  
  
 0.438
ECA1626
Conserved hypothetical protein; Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:AAM85965 (EMBL:AL031866) (193 aa) fasta scores: E(): 2.3e-46, 62.17% id in 193 aa, and to Yersinia pseudotuberculosis hypothetical 18.9 kDa protein SWALL:Q9X9G3 (EMBL:AJ236887) (166 aa) fasta scores: E(): 1.6e-38, 62.04% id in 166 aa.
  
     0.433
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.